Bioinformatics Tools for Infectious Disease Research
( 30 Modules )

Module #1
Introduction to Bioinformatics and Infectious Disease Research
Overview of bioinformatics, infectious disease research, and importance of bioinformatics in infectious disease research

Module #2
Sequence Analysis Fundamentals
Introduction to DNA, RNA, and protein sequence analysis, including sequence formats and annotation

Module #3
BLAST and Sequence Alignment
Introduction to BLAST, sequence alignment, and pairwise alignment methods

Module #4
Multiple Sequence Alignment and Phylogenetics
Introduction to multiple sequence alignment, phylogenetic analysis, and phylogenetic tree construction

Module #5
Genome Assembly and Annotation
Introduction to genome assembly, genome annotation, and functional annotation

Module #6
RNA-Seq and Transcriptomics
Introduction to RNA-Seq, transcriptomics, and differential gene expression analysis

Module #7
Variant Detection and Genotyping
Introduction to variant detection, genotyping, and variant annotation

Module #8
Infectious Disease Genomics
Introduction to infectious disease genomics, including genomic epidemiology and outbreak analysis

Module #9
Metagenomics and Microbiome Analysis
Introduction to metagenomics, microbiome analysis, and functional metagenomics

Module #10
Bioinformatics Tools for Infectious Disease Research
Overview of bioinformatics tools commonly used in infectious disease research, including NCBI, EBI, and other resources

Module #11
NGS Data Analysis Pipelines
Introduction to NGS data analysis pipelines, including DNA-seq, RNA-seq, and ChIP-seq analysis

Module #12
Infectious Disease Databases and Resources
Introduction to infectious disease databases and resources, including GenBank, PubMed, and others

Module #13
Computational Methods for Infectious Disease Forecasting
Introduction to computational methods for infectious disease forecasting, including machine learning and statistical modeling

Module #14
Phylogenomic Analysis of Infectious Diseases
Introduction to phylogenomic analysis of infectious diseases, including evolutionary analysis and phylodynamics

Module #15
Bioinformatics for Antimicrobial Resistance Research
Introduction to bioinformatics for antimicrobial resistance research, including AMR gene detection and prediction

Module #16
Bioinformatics for Vaccine Development
Introduction to bioinformatics for vaccine development, including epitope prediction and vaccine design

Module #17
Infectious Disease Surveillance and Outbreak Investigation
Introduction to infectious disease surveillance and outbreak investigation, including genomic epidemiology and contact tracing

Module #18
Bioinformatics for Infectious Disease Diagnosis
Introduction to bioinformatics for infectious disease diagnosis, including metagenomic analysis and diagnostic pipelines

Module #19
Computational Methods for Infectious Disease Transmission Dynamics
Introduction to computational methods for infectious disease transmission dynamics, including network analysis and agent-based modeling

Module #20
Bioinformatics for Infectious Disease Research:Case Studies
Real-world case studies of bioinformatics applications in infectious disease research, including disease outbreaks and pandemics

Module #21
Advanced Topics in Bioinformatics for Infectious Disease Research
Advanced topics in bioinformatics for infectious disease research, including single-cell RNA-seq and spatial transcriptomics

Module #22
Best Practices for Bioinformatics in Infectious Disease Research
Best practices for bioinformatics in infectious disease research, including data management, reproducibility, and collaboration

Module #23
Bioinformatics Tools for Infectious Disease Research:Hands-on Exercises
Hands-on exercises with bioinformatics tools commonly used in infectious disease research, including NCBI, EBI, and others

Module #24
NGS Data Analysis Pipelines:Hands-on Exercises
Hands-on exercises with NGS data analysis pipelines, including DNA-seq, RNA-seq, and ChIP-seq analysis

Module #25
Phylogenomic Analysis of Infectious Diseases:Hands-on Exercises
Hands-on exercises with phylogenomic analysis of infectious diseases, including evolutionary analysis and phylodynamics

Module #26
Infectious Disease Databases and Resources:Hands-on Exercises
Hands-on exercises with infectious disease databases and resources, including GenBank, PubMed, and others

Module #27
Computational Methods for Infectious Disease Forecasting:Hands-on Exercises
Hands-on exercises with computational methods for infectious disease forecasting, including machine learning and statistical modeling

Module #28
Bioinformatics for Infectious Disease Research:Group Project
Group project:applying bioinformatics tools and concepts to a real-world infectious disease research problem

Module #29
Bioinformatics for Infectious Disease Research:Final Project Presentations
Final project presentations:students present their group projects and receive feedback from instructors and peers

Module #30
Course Wrap-Up & Conclusion
Planning next steps in Bioinformatics Tools for Infectious Disease Research career

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Bioinformatics Tools for Infectious Disease Research ( 30 Modules )

Bioinformatics Tools for Infectious Disease Research
( 30 Modules )