Bioinformatics Tools for Precision Oncology
( 25 Modules )

Module #1
Introduction to Precision Oncology
Overview of precision oncology, its importance, and the role of bioinformatics

Module #2
Bioinformatics Tools for NGS Data Analysis
Overview of NGS data analysis pipelines and tools (e.g. BWA, Samtools, GATK)

Module #3
Quality Control and Preprocessing of NGS Data
FastQC, Trimmomatic, and AdapterRemoval for quality control and preprocessing

Module #4
Alignment and Assembly of NGS Data
BWA, Bowtie, and Canu for alignment and assembly

Module #5
Variant Calling and Annotation
GATK, Mutect, and SnpEff for variant calling and annotation

Module #6
Introduction to Cancer Genomics
Overview of cancer genomics, tumor heterogeneity, and clonal evolution

Module #7
Somatic Mutation Calling
Tools for somatic mutation calling (e.g. MuTect, VarScan)

Module #8
Copy Number Variation Analysis
Tools for CNV analysis (e.g. CNVkit, Control-FREEC)

Module #9
RNA-Seq Data Analysis for Cancer Research
STAR, Salmon, and DESeq2 for RNA-Seq data analysis

Module #10
Differential Gene Expression Analysis
DESeq2, EdgeR, and Limma for differential gene expression analysis

Module #11
Pathway Analysis for Cancer Research
Tools for pathway analysis (e.g. ReactomePA, Pathway Studio)

Module #12
Enrichment Analysis for Cancer Research
Tools for enrichment analysis (e.g. GSEA, enrichmentBrowser)

Module #13
Introduction to Proteomics and Phosphoproteomics
Overview of proteomics and phosphoproteomics, applications in cancer research

Module #14
Protein Sequence Analysis for Cancer Research
Tools for protein sequence analysis (e.g. BLAST, ClustalW)

Module #15
Protein-Protein Interaction Network Analysis
Tools for PPI network analysis (e.g. STRING, CytoScape)

Module #16
Cancer Biomarker Discovery and Validation
Bioinformatics approaches for cancer biomarker discovery and validation

Module #17
Precision Oncology in Practice
Case studies of precision oncology in clinical practice

Module #18
Clinical Decision Support Systems for Precision Oncology
Overview of CDSS and their applications in precision oncology

Module #19
Personalized Cancer Therapy and Resistance
Bioinformatics approaches for personalized cancer therapy and resistance prediction

Module #20
Bioinformatics for Cancer Immunotherapy
Bioinformatics approaches for cancer immunotherapy (e.g. neoantigen prediction)

Module #21
Data Integration and Visualization for Precision Oncology
Tools for data integration and visualization (e.g. UCSC Genome Browser, Circos)

Module #22
Big Data and Cloud Computing for Precision Oncology
Overview of big data and cloud computing for precision oncology research

Module #23
Ethical Considerations for Precision Oncology
Ethical considerations for precision oncology research and clinical practice

Module #24
Future Directions in Precision Oncology
Future directions and emerging trends in precision oncology research

Module #25
Course Wrap-Up & Conclusion
Planning next steps in Bioinformatics Tools for Precision Oncology career

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Bioinformatics Tools for Precision Oncology ( 25 Modules )

Bioinformatics Tools for Precision Oncology
( 25 Modules )